Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
THII_1504Hypothetical protein. (607 aa)    
Predicted Functional Partners:
THII_1503
Metal ABC transporter permease.
       0.557
THII_1164
Biopolymer transport protein.
   
 
 0.499
THII_1428
Biopolymer transport protein ExbD/TolR family.
   
 
 0.499
tolR
Protein TolR; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
   
 
 0.499
THII_2112
Biopolymer transport protein ExbD/TolR.
   
 
 0.499
THII_1165
Biopolymer transporter ExbB.
   
 
 0.473
THII_1429
MotA/TolQ/ExbB proton channel family protein.
   
 
 0.473
tolQ
Protein TolQ; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
   
 
 0.473
THII_2093
Biopolymer transporter.
   
 
 0.473
Your Current Organism:
Thioploca ingrica
NCBI taxonomy Id: 40754
Other names: T. ingrica
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