Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
THII_1514Putative ATPase. (1775 aa)    
Predicted Functional Partners:
THII_0443
Response regulator receiver protein.
 
 
0.880
THII_2294
PAS domain S-box.
  
 
 0.854
THII_3834
Sensory transduction histidine kinase.
  
 
 0.854
THII_2168
Signal transduction histidine kinase.
  
 
 0.853
THII_0070
Signal transduction histidine kinase.
  
 
 0.812
THII_1949
Signal transduction histidine kinase.
  
 
 0.799
THII_0750
Signal transduction histidine kinase.
  
 
 0.794
THII_1954
Signal transduction histidine kinase.
  
 
 0.789
THII_1951
GAF sensor hybrid histidine kinase.
  
 
 0.784
THII_3734
Response regulator receiver.
  
 
 0.777
Your Current Organism:
Thioploca ingrica
NCBI taxonomy Id: 40754
Other names: T. ingrica
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