Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
THII_1522NAD-reducing hydrogenase hoxS subunit delta. (180 aa)    
Predicted Functional Partners:
THII_1523
Hydrogen dehydrogenase.
   
 0.995
THII_1524
NADP oxidoreductase.
 
 
 
 0.992
THII_1521
NADP oxidoreductase; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family.
 
 
 0.988
THII_2278
Heterodisulfide reductase subunit A.
  
 
 0.971
THII_0778
Pyridine nucleotide-disulfide oxidoreductase family.
   
 
 0.890
THII_3264
HoxW protein.
 
  
 0.851
THII_3315
Nickel-dependent hydrogenase large subunit; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family.
  
 
 0.851
THII_2277
Heterodisulfide reductase subunit A.
  
 
 0.690
THII_0523
NADH-quinone oxidoreductase subunit E.
   
 
 0.670
THII_2694
Hydrogenase expression/formation protein HypE.
 
   
 0.590
Your Current Organism:
Thioploca ingrica
NCBI taxonomy Id: 40754
Other names: T. ingrica
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