STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
THII_1549Formate hydrogenlyase subunit 4. (330 aa)    
Predicted Functional Partners:
THII_0915
Ni,Fe-hydrogenase III large subunit.
 
 
 0.997
THII_1548
Formate hydrogenlyase subunit 3/multisubunit Na+/H+ antiporter, MnhD subunit.
 
 
 0.993
THII_0841
Hydrogenase.
 
 
 0.992
THII_0914
Oxidoreductase.
 
 
 0.954
THII_0913
Formate hydrogenlyase.
 
  
 0.896
nuoI
NADH-quinone oxidoreductase subunit I; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.
  
 
 0.878
THII_2889
Ferredoxin.
  
 
 0.636
THII_0150
4Fe-4S ferredoxin iron-sulfur binding domain-containing protein.
  
 
 0.622
THII_1818
Ferredoxin.
  
 
 0.622
THII_3129
Hypothetical protein.
  
 
 0.622
Your Current Organism:
Thioploca ingrica
NCBI taxonomy Id: 40754
Other names: T. ingrica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.