Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
THII_1561Heavy metal transport/detoxification protein. (92 aa)    
Predicted Functional Partners:
THII_2244
P-type ATPase.
  
 
 0.753
THII_2790
Cation transport ATPase.
  
 
 0.753
THII_2793
Cadmium-transporting ATPase.
  
 
 0.753
THII_3595
Copper/silver-translocating P-type ATPase.
  
 
 0.753
THII_1418
Cation transporting ATPase.
  
 
 0.752
THII_1434
Hypothetical protein.
 
     0.494
panB
Ketopantoate hydroxymethyltransferase; Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha- ketoisovalerate to form ketopantoate; Belongs to the PanB family.
       0.432
THII_1464
Hypothetical protein.
 
     0.427
THII_0381
Peptidyl-prolyl cis-trans isomerase B; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
  
   0.419
THII_3617
Peptidyl-prolyl cis-trans isomerase B.
  
   0.419
Your Current Organism:
Thioploca ingrica
NCBI taxonomy Id: 40754
Other names: T. ingrica
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