Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
THII_1587Hypothetical protein. (365 aa)    
Predicted Functional Partners:
THII_0997
Hypothetical protein.
 
  
 0.799
THII_3290
Hypothetical protein.
 
  
 0.799
THII_0999
Hypothetical protein.
 
   
 0.699
THII_1586
Hypothetical protein.
  
    0.676
THII_3289
Hypothetical protein.
 
   
 0.634
THII_1012
Hemolysin-coregulated protein.
 
  
 0.627
THII_2613
VgrG protein.
 
   
 0.615
THII_3603
Hypothetical protein.
 
   
 0.593
THII_3604
VgrG protein.
 
   
 0.581
THII_2621
ImpA family type VI secretion-associated protein.
 
   
 0.571
Your Current Organism:
Thioploca ingrica
NCBI taxonomy Id: 40754
Other names: T. ingrica
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