STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
THII_1605ABC transporter. (725 aa)    
Predicted Functional Partners:
THII_0049
Secretion protein HlyD.
 
 0.972
THII_2356
Outer membrane efflux protein.
 
  
 0.860
THII_1552
Hypothetical protein.
 
  
 0.825
THII_1604
Hypothetical protein.
       0.697
THII_1664
ABC transporter, transmembrane region.
 
 
 
0.671
msbA
ATP-binding protein; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.
 
 
 
0.669
THII_2173
Type I secretion outer membrane protein, TolC.
 
  
 0.622
THII_1603
NLP/P60 protein.
       0.601
THII_0167
Putative protease.
 
  
 0.587
THII_2734
Multidrug resistance efflux pump.
  
 
 0.577
Your Current Organism:
Thioploca ingrica
NCBI taxonomy Id: 40754
Other names: T. ingrica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.