THII_1618 protein (Thioploca ingrica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

THII_1618

Cytochrome c oxidase cbb3-type, subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex. (308 aa)

Predicted Functional Partners:

THII_1615

0.999

THII_1616

0.999

THII_1617

0.985

THII_2333

0.985

THII_0853

0.965

THII_0852

0.912

THII_3111

0.897

THII_0678

0.831

THII_0851

0.815

THII_2334

0.800

Your Current Organism:

Thioploca ingrica

NCBI taxonomy Id: 40754
Other names: T. ingrica

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
THII_0678	THII_1615	Cytochrome oxidase maturation protein, cbb3-type.	Cytochrome c oxidase cbb3-type, subunit I; Belongs to the heme-copper respiratory oxidase family.	0.757
THII_0678	THII_1616	Cytochrome oxidase maturation protein, cbb3-type.	Cytochrome c oxidase cbb3-type, subunit II.	0.814
THII_0678	THII_1618	Cytochrome oxidase maturation protein, cbb3-type.	Cytochrome c oxidase cbb3-type, subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.	0.831
THII_0678	THII_2333	Cytochrome oxidase maturation protein, cbb3-type.	Cytochrome c oxidase accessory protein FixG.	0.809
THII_0678	THII_2334	Cytochrome oxidase maturation protein, cbb3-type.	Hypothetical protein.	0.814
THII_0851	THII_0852	Cytochrome c.	Cytochrome b; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	0.999
THII_0851	THII_0853	Cytochrome c.	Ubiquinol-cytochrome c reductase; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	0.999
THII_0851	THII_1615	Cytochrome c.	Cytochrome c oxidase cbb3-type, subunit I; Belongs to the heme-copper respiratory oxidase family.	0.858
THII_0851	THII_1616	Cytochrome c.	Cytochrome c oxidase cbb3-type, subunit II.	0.892
THII_0851	THII_1618	Cytochrome c.	Cytochrome c oxidase cbb3-type, subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.	0.815
THII_0852	THII_0851	Cytochrome b; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	Cytochrome c.	0.999
THII_0852	THII_0853	Cytochrome b; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	Ubiquinol-cytochrome c reductase; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	0.999
THII_0852	THII_1615	Cytochrome b; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	Cytochrome c oxidase cbb3-type, subunit I; Belongs to the heme-copper respiratory oxidase family.	0.880
THII_0852	THII_1616	Cytochrome b; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	Cytochrome c oxidase cbb3-type, subunit II.	0.881
THII_0852	THII_1618	Cytochrome b; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	Cytochrome c oxidase cbb3-type, subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.	0.912
THII_0852	THII_3111	Cytochrome b; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	Cytochrome c.	0.715
THII_0853	THII_0851	Ubiquinol-cytochrome c reductase; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	Cytochrome c.	0.999
THII_0853	THII_0852	Ubiquinol-cytochrome c reductase; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	Cytochrome b; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	0.999
THII_0853	THII_1615	Ubiquinol-cytochrome c reductase; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	Cytochrome c oxidase cbb3-type, subunit I; Belongs to the heme-copper respiratory oxidase family.	0.938
THII_0853	THII_1616	Ubiquinol-cytochrome c reductase; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	Cytochrome c oxidase cbb3-type, subunit II.	0.961