Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
THII_1630GTP-binding protein. (161 aa)    
Predicted Functional Partners:
THII_1629
OmpA/MotB protein.
 
     0.954
THII_1846
Sodium/hydrogen exchanger family protein.
    
 0.916
THII_2504
Hypothetical protein.
  
     0.659
THII_1693
Ankyrin.
 
 0.634
THII_1628
Hypothetical protein.
       0.619
THII_1820
Calmodulin.
  
 0.595
THII_3678
Ankyrin.
  
 0.577
THII_2778
WD40 repeat-containing protein, subgroup.
 
 
  0.573
THII_3143
Secreted protein containing DUF928.
  
     0.556
THII_3237
Filamentous hemagglutinin-like protein.
  
     0.545
Your Current Organism:
Thioploca ingrica
NCBI taxonomy Id: 40754
Other names: T. ingrica
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