Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
THII_1694Cytochrome c. (189 aa)    
Predicted Functional Partners:
THII_2890
Ferredoxin-type protein, NapH/MauN family.
 
 
 0.894
THII_2889
Ferredoxin.
 
  
 0.816
THII_1437
Hypothetical protein.
  
 
 0.720
THII_1692
Flavocytochrome c subunit fccA.
 
   
 0.698
THII_1693
Ankyrin.
       0.664
THII_0271
Molybdopterin oxidoreductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 
 0.623
THII_3261
Molybdopterin oxidoreductase.
 
 
 0.623
THII_0027
Molybdopterin oxidoreductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
 
 0.550
THII_0338
Iron-sulfur cluster-binding protein.
 
 
 0.543
THII_3165
Cytochrome c assembly protein.
 
    0.498
Your Current Organism:
Thioploca ingrica
NCBI taxonomy Id: 40754
Other names: T. ingrica
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