STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
THII_1785Chemotaxis protein CheY. (192 aa)    
Predicted Functional Partners:
THII_1784
ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component.
 
  
 0.896
THII_1778
Anaerobic dehydrogenase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
 
  
 0.853
THII_1782
Nitrite reductase; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
 
  
 0.838
THII_1781
Nitrite reductase [NAD(P)H], small subunit.
 
  
 0.817
nifH
Nitrogenase iron protein; The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex, which has 2 components: the iron protein and the molybdenum-iron protein; Belongs to the NifH/BchL/ChlL family.
   
  
 0.760
THII_3146
ABC nitrate/nitrite/cyanate family transporter, periplasmic ligand binding protein.
 
  
 0.610
THII_1783
Major facilitator superfamily transporter.
 
  
 0.605
THII_3347
MscS Mechanosensitive ion channel.
  
 
 0.568
THII_0560
MscS Mechanosensitive ion channel.
  
 
 0.550
THII_3348
MscS Mechanosensitive ion channel.
  
 
 0.550
Your Current Organism:
Thioploca ingrica
NCBI taxonomy Id: 40754
Other names: T. ingrica
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