Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
THII_1897Glycine betaine/proline transport system permease protein. (292 aa)    
Predicted Functional Partners:
THII_0588
Glycine betaine/proline transport system substrate-binding protein.
 
 0.999
THII_1896
Glycine betaine/proline transport system substrate-binding protein.
 
 0.999
THII_1898
Glycine betaine/L-proline ABC transporter ATPase.
 0.999
THII_0767
Putative permease.
     
  0.540
THII_1305
Permease.
     
  0.540
THII_2771
ABC transporter ATP-binding protein.
     
  0.540
THII_1899
SAM-dependent methyltransferase.
       0.510
THII_1900
SAM-dependent methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. Glycine N-methyltransferase family.
       0.510
ribB
3,4-dihydroxy-2-butanone-4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
      
 0.491
THII_0384
ABC-type Mn2+/Zn2+ transport system, permease component.
     
 0.419
Your Current Organism:
Thioploca ingrica
NCBI taxonomy Id: 40754
Other names: T. ingrica
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