THII_1925 protein (Thioploca ingrica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

THII_1925

Chemotaxis protein CheW. (152 aa)

Predicted Functional Partners:

cheB-2

0.995

THII_1927

0.994

THII_1928

0.994

THII_1924

0.990

THII_1926

0.950

THII_1283

0.852

THII_1988

0.852

THII_1930

0.849

THII_2177

0.793

THII_3210

0.774

Your Current Organism:

Thioploca ingrica

NCBI taxonomy Id: 40754
Other names: T. ingrica

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
THII_1283	THII_1924	THII_1283	THII_1924	Chemotaxis protein histidine kinase-like protein.	Methyl-accepting chemotaxis protein.	0.868
THII_1283	THII_1925	THII_1283	THII_1925	Chemotaxis protein histidine kinase-like protein.	Chemotaxis protein CheW.	0.852
THII_1283	THII_1926	THII_1283	THII_1926	Chemotaxis protein histidine kinase-like protein.	CheR-type MCP methyltransferase.	0.807
THII_1283	THII_1927	THII_1283	THII_1927	Chemotaxis protein histidine kinase-like protein.	CheW-like protein.	0.856
THII_1283	THII_1928	THII_1283	THII_1928	Chemotaxis protein histidine kinase-like protein.	Response regulator receiver domain protein.	0.819
THII_1283	THII_1930	THII_1283	THII_1930	Chemotaxis protein histidine kinase-like protein.	Adenylate/guanylate cyclase.	0.451
THII_1283	THII_1988	THII_1283	THII_1988	Chemotaxis protein histidine kinase-like protein.	Chemotaxis protein histidine kinase-like protein.	0.816
THII_1283	THII_2177	THII_1283	THII_2177	Chemotaxis protein histidine kinase-like protein.	Chemotaxis protein histidine kinase CheA.	0.482
THII_1283	THII_3210	THII_1283	THII_3210	Chemotaxis protein histidine kinase-like protein.	Hypothetical protein.	0.982
THII_1283	cheB-2	THII_1283	THII_1929	Chemotaxis protein histidine kinase-like protein.	Response regulator receiver modulated CheB methylesterase; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid.	0.908
THII_1924	THII_1283	THII_1924	THII_1283	Methyl-accepting chemotaxis protein.	Chemotaxis protein histidine kinase-like protein.	0.868
THII_1924	THII_1925	THII_1924	THII_1925	Methyl-accepting chemotaxis protein.	Chemotaxis protein CheW.	0.990
THII_1924	THII_1926	THII_1924	THII_1926	Methyl-accepting chemotaxis protein.	CheR-type MCP methyltransferase.	0.993
THII_1924	THII_1927	THII_1924	THII_1927	Methyl-accepting chemotaxis protein.	CheW-like protein.	0.989
THII_1924	THII_1928	THII_1924	THII_1928	Methyl-accepting chemotaxis protein.	Response regulator receiver domain protein.	0.992
THII_1924	THII_1930	THII_1924	THII_1930	Methyl-accepting chemotaxis protein.	Adenylate/guanylate cyclase.	0.795
THII_1924	THII_1988	THII_1924	THII_1988	Methyl-accepting chemotaxis protein.	Chemotaxis protein histidine kinase-like protein.	0.872
THII_1924	THII_2177	THII_1924	THII_2177	Methyl-accepting chemotaxis protein.	Chemotaxis protein histidine kinase CheA.	0.888
THII_1924	cheB-2	THII_1924	THII_1929	Methyl-accepting chemotaxis protein.	Response regulator receiver modulated CheB methylesterase; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid.	0.993
THII_1925	THII_1283	THII_1925	THII_1283	Chemotaxis protein CheW.	Chemotaxis protein histidine kinase-like protein.	0.852