Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
THII_1969ABC-type multidrug transport system, ATPase component. (320 aa)    
Predicted Functional Partners:
THII_1968
ABC transporter permease.
 
 
 0.968
THII_2736
Mannose-1-phosphate guanyltransferase.
 
  
 0.940
THII_2891
ABC transporter.
 
    
0.907
THII_1967
Hypothetical protein.
 
   
 0.897
THII_1662
ABC transporter permease.
 
 
 0.865
THII_1966
Hypothetical protein.
 
     0.825
THII_0487
ABC transporter.
 
    
0.770
THII_0808
ABC transporter ATP-binding protein.
 
     
0.756
THII_1970
ATPase family protein associated with various cellular activities (AAA).
  
    0.728
THII_1661
Hypothetical protein.
 
  
 0.698
Your Current Organism:
Thioploca ingrica
NCBI taxonomy Id: 40754
Other names: T. ingrica
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