Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
THII_1978Type II secretory protein GspE. (572 aa)    
Predicted Functional Partners:
THII_1979
Type IV fimbrial assembly protein pilC.
 
 0.937
THII_1980
Type IV prepilin-like proteins leader peptide-processing enzyme; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
 
 0.891
THII_2069
Bacterial type II secretion system protein.
 
 
 0.884
THII_2262
Type II secretory pathway, component PulF.
 
 
 0.884
THII_1721
Type II secretion system protein.
 
 
 0.883
THII_3300
General secretion pathway protein F.
 
 
 0.883
THII_3395
Type II secretion system protein.
  
 
 0.878
THII_2180
Tfp pilus assembly protein PilZ.
  
 
 
 0.694
THII_2716
General secretion pathway protein L; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
  
 
 0.662
THII_2741
Hypothetical protein.
  
 
 0.662
Your Current Organism:
Thioploca ingrica
NCBI taxonomy Id: 40754
Other names: T. ingrica
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