STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
THII_1978Type II secretory protein GspE. (572 aa)    
Predicted Functional Partners:
THII_1979
Type IV fimbrial assembly protein pilC.
 
 0.942
THII_1980
Type IV prepilin-like proteins leader peptide-processing enzyme; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
 
 0.904
THII_2069
Bacterial type II secretion system protein.
 
 0.892
THII_2262
Type II secretory pathway, component PulF.
 
 0.892
THII_3300
General secretion pathway protein F.
 
 0.892
THII_1721
Type II secretion system protein.
 
 0.889
THII_3395
Type II secretion system protein.
 
 
 0.887
THII_3933
Bacterial type II and III secretion system protein.
 
 
 
 0.644
THII_3928
Type IV pilus assembly protein PilM.
 
 
 0.572
THII_0199
DNA internalization-related competence protein ComEC/Rec2.
  
  
 0.555
Your Current Organism:
Thioploca ingrica
NCBI taxonomy Id: 40754
Other names: T. ingrica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.