Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
THII_1985Hypothetical protein. (360 aa)    
Predicted Functional Partners:
THII_1986
Chemotaxis signal transduction protein.
 
     0.786
THII_1988
Chemotaxis protein histidine kinase-like protein.
 
     0.550
THII_1194
Hypothetical protein.
  
     0.534
THII_0899
ATPase AAA.
  
     0.502
THII_2379
Hypothetical protein.
  
     0.487
THII_3067
Histidine kinase.
  
     0.476
THII_3146
ABC nitrate/nitrite/cyanate family transporter, periplasmic ligand binding protein.
  
     0.475
THII_3283
PDK repeat-containing protein.
  
     0.453
THII_1784
ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component.
  
     0.433
THII_1447
Secreted protein containing C-terminal beta-propeller domain.
  
     0.428
Your Current Organism:
Thioploca ingrica
NCBI taxonomy Id: 40754
Other names: T. ingrica
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