Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
THII_2059Hypothetical protein. (57 aa)    
Predicted Functional Partners:
THII_2060
Hypothetical protein.
 
     0.946
THII_2058
Hypothetical protein.
       0.773
THII_0235
PIN domain protein.
  
     0.767
THII_2061
Metallophosphoesterase.
       0.723
THII_3084
Hypothetical protein.
  
     0.663
THII_2057
Hypothetical protein.
       0.615
THII_0372
Hypothetical protein.
  
     0.482
THII_0424
Glycosyl hydrolase, family 57.
  
     0.473
THII_0370
Hypothetical protein.
  
     0.451
THII_1074
Hypothetical protein.
  
     0.437
Your Current Organism:
Thioploca ingrica
NCBI taxonomy Id: 40754
Other names: T. ingrica
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