Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
THII_2064Hypothetical protein. (383 aa)    
Predicted Functional Partners:
THII_2065
GTP-binding protein.
 
     0.929
THII_2062
roadblock/LC7 family protein.
 
     0.883
THII_1294
GTP-binding protein.
 
     0.770
THII_1292
GTP-binding protein.
 
     0.769
THII_3167
Heme exporter protein CcmD; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmD/CycX/HelD family.
  
     0.698
THII_2066
Hypothetical protein.
       0.693
THII_1272
General secretory pathway protein K.
  
     0.683
THII_2379
Hypothetical protein.
  
     0.672
THII_0899
ATPase AAA.
  
     0.668
THII_1194
Hypothetical protein.
  
     0.663
Your Current Organism:
Thioploca ingrica
NCBI taxonomy Id: 40754
Other names: T. ingrica
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