Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
THII_2075General secretion pathway protein H. (234 aa)    
Predicted Functional Partners:
THII_3096
MSHA biogenesis protein MshL.
 
    0.787
THII_2765
Prepilin-type N-terminal cleavage/methylation domain-containing protein.
 
     0.779
THII_2766
Hypothetical protein.
 
     0.779
THII_2767
Prepilin-type N-terminal cleavage/methylation domain-containing protein.
 
     0.779
THII_1018
Hypothetical protein.
 
     0.771
THII_3067
Histidine kinase.
  
     0.743
THII_2069
Bacterial type II secretion system protein.
 
    0.716
THII_0423
Secretion system protein E.
  
   0.679
THII_2076
Hypothetical protein.
 
    
0.638
THII_2074
Prepilin-type N-terminal cleavage/methylation domain-containing protein.
 
    
0.580
Your Current Organism:
Thioploca ingrica
NCBI taxonomy Id: 40754
Other names: T. ingrica
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