Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
THII_2098Short-chain dehydrogenase. (656 aa)    
Predicted Functional Partners:
THII_2201
FkbH-like protein; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 0.885
THII_2208
Polyketide synthase.
  
 
 0.777
THII_0012
Polyketide synthase family protein.
  
 
 0.676
THII_1050
Amino acid adenylation enzyme/thioester reductase family protein.
  
 
 0.607
THII_2215
Malonyl CoA-ACP transacylase.
  
 
 0.602
THII_2099
Hypothetical protein.
       0.551
THII_2783
tubC protein.
  
 
 0.516
THII_2123
2-acyl-glycerophospho-ethanolamine acyltransferase.
  
 
 0.486
THII_1281
Phosphotransacetylase.
  
 0.472
THII_2061
Metallophosphoesterase.
    
 
 0.458
Your Current Organism:
Thioploca ingrica
NCBI taxonomy Id: 40754
Other names: T. ingrica
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