Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
THII_2186Hypothetical protein. (304 aa)    
Predicted Functional Partners:
THII_2187
Transmembrane transporter.
  
    0.701
THII_2606
Hypothetical protein.
  
     0.570
THII_2188
Methyl-accepting chemotaxis protein.
  
    0.562
THII_0284
Hypothetical protein.
  
     0.529
THII_0015
Hypothetical protein.
  
     0.516
THII_1059
Putative transposase.
  
     0.514
THII_3332
Putative transposase.
  
     0.507
THII_2276
Transposase.
  
     0.506
THII_1095
Transposase.
  
     0.500
THII_3029
Hypothetical protein.
  
     0.475
Your Current Organism:
Thioploca ingrica
NCBI taxonomy Id: 40754
Other names: T. ingrica
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