Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
THII_2261General secretion pathway protein D. (731 aa)    
Predicted Functional Partners:
THII_0854
General secretion pathway protein D.
  
  
 
0.929
THII_0589
General secretion pathway protein D.
  
  
 
0.927
THII_0590
General secretion pathway protein C.
 
 
 0.827
THII_0856
General secretion pathway protein G.
 
  
 0.801
THII_2700
Bacterial type II secretion system protein.
 
  
 0.799
THII_1272
General secretory pathway protein K.
 
   
 0.778
THII_2843
General secretion pathway protein G.
 
  
 0.778
THII_2262
Type II secretory pathway, component PulF.
 
  
 0.776
THII_0857
General secretion pathway protein H.
 
   
 0.757
THII_2263
Type II secretion system protein E.
 
  
 0.735
Your Current Organism:
Thioploca ingrica
NCBI taxonomy Id: 40754
Other names: T. ingrica
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