Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
THII_2351Putative aspartyl protease. (171 aa)    
Predicted Functional Partners:
THII_2352
Nicotinate-nucleotide pyrophosphorylase; Belongs to the NadC/ModD family.
       0.786
THII_2353
Transmembrane sensor domain-containing protein.
       0.741
THII_3931
Type IV pilus assembly protein PilP.
  
     0.524
THII_2354
Hypothetical protein.
       0.514
THII_2696
HflBKC-binding inner membrane protein; Belongs to the BI1 family.
  
     0.510
THII_2669
Hypothetical protein.
  
     0.478
THII_3932
Type IV pilus assembly protein PilP.
  
     0.475
THII_3871
Putative membrane protein.
  
     0.452
THII_2826
Generic methyl-transferase.
  
     0.440
THII_3930
Type IV pilus assembly protein PilO.
  
     0.410
Your Current Organism:
Thioploca ingrica
NCBI taxonomy Id: 40754
Other names: T. ingrica
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