STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
THII_2405Peptidase C60, sortase A and B. (193 aa)    
Predicted Functional Partners:
THII_2435
NAD(+) ADP-ribosyltransferase.
 
  
 0.775
THII_2407
Sensor signal transduction histidine kinase.
  
     0.732
THII_2379
Hypothetical protein.
  
     0.603
THII_1194
Hypothetical protein.
  
     0.585
THII_0899
ATPase AAA.
  
     0.578
THII_3847
ATPase.
  
     0.541
THII_3283
PDK repeat-containing protein.
  
     0.537
THII_2406
Chemotaxis protein CheY.
  
     0.533
THII_3905
biotin-(acetyl-CoA carboxylase) ligase.
      
 0.491
THII_2387
Filamentous hemagglutinin family N-terminal domain.
  
     0.486
Your Current Organism:
Thioploca ingrica
NCBI taxonomy Id: 40754
Other names: T. ingrica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.