Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| THII_1217 | THII_1329 | THII_1217 | THII_1329 | ATP-dependent DNA helicase RecQ. | Single-strand DNA binding protein. | 0.459 |
| THII_1217 | THII_1954 | THII_1217 | THII_1954 | ATP-dependent DNA helicase RecQ. | Signal transduction histidine kinase. | 0.597 |
| THII_1217 | polA | THII_1217 | THII_1270 | ATP-dependent DNA helicase RecQ. | DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.994 |
| THII_1217 | recA | THII_1217 | THII_1413 | ATP-dependent DNA helicase RecQ. | Hypothetical protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.975 |
| THII_1217 | topA | THII_1217 | THII_2430 | ATP-dependent DNA helicase RecQ. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.997 |
| THII_1329 | THII_1217 | THII_1329 | THII_1217 | Single-strand DNA binding protein. | ATP-dependent DNA helicase RecQ. | 0.459 |
| THII_1329 | THII_2428 | THII_1329 | THII_2428 | Single-strand DNA binding protein. | DNA processing chain A. | 0.552 |
| THII_1329 | THII_3728 | THII_1329 | THII_3728 | Single-strand DNA binding protein. | Glutamate synthase. | 0.483 |
| THII_1329 | polA | THII_1329 | THII_1270 | Single-strand DNA binding protein. | DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.597 |
| THII_1329 | rpoA | THII_1329 | THII_0288 | Single-strand DNA binding protein. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.527 |
| THII_1329 | topA | THII_1329 | THII_2430 | Single-strand DNA binding protein. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.980 |
| THII_1329 | tsaC | THII_1329 | THII_2431 | Single-strand DNA binding protein. | SUA5/yciO/yrdC domain-containing protein; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Catalyzes the conversion of L-threonine, HCO(3)(-)/CO(2) and ATP to give threonylcarbamoyl-AMP (TC-AMP) as the acyladenylate intermediate, with the release of diphosphate. | 0.693 |
| THII_1954 | THII_1217 | THII_1954 | THII_1217 | Signal transduction histidine kinase. | ATP-dependent DNA helicase RecQ. | 0.597 |
| THII_1954 | THII_3728 | THII_1954 | THII_3728 | Signal transduction histidine kinase. | Glutamate synthase. | 0.473 |
| THII_1954 | leuS | THII_1954 | THII_1852 | Signal transduction histidine kinase. | leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. | 0.436 |
| THII_1954 | polA | THII_1954 | THII_1270 | Signal transduction histidine kinase. | DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.967 |
| THII_1954 | recA | THII_1954 | THII_1413 | Signal transduction histidine kinase. | Hypothetical protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.746 |
| THII_1954 | topA | THII_1954 | THII_2430 | Signal transduction histidine kinase. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.784 |
| THII_2428 | THII_1329 | THII_2428 | THII_1329 | DNA processing chain A. | Single-strand DNA binding protein. | 0.552 |
| THII_2428 | recA | THII_2428 | THII_1413 | DNA processing chain A. | Hypothetical protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.428 |
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