Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
THII_2433Ammonium transporter. (446 aa)    
Predicted Functional Partners:
THII_2432
Nitrogen regulatory protein PII; Belongs to the P(II) protein family.
 
 0.999
THII_0050
PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein.
 
    
 0.889
THII_2963
PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein.
    
 0.877
THII_0877
Sensory box/GGDEF family protein.
 
    
 0.810
THII_2434
Hypothetical protein.
       0.762
THII_3911
Diguanylate cyclase/phosphodiesterase.
 
      0.754
THII_3728
Glutamate synthase.
 
  
 0.723
THII_2435
NAD(+) ADP-ribosyltransferase.
       0.695
THII_0257
Glutamine synthetase, type I.
  
  
 0.665
glnD
UTP-GlnB uridylyltransferase, GlnD; Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen metabolism.
 
   
 0.605
Your Current Organism:
Thioploca ingrica
NCBI taxonomy Id: 40754
Other names: T. ingrica
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