Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
THII_2435NAD(+) ADP-ribosyltransferase. (855 aa)    
Predicted Functional Partners:
THII_2405
Peptidase C60, sortase A and B.
 
  
 0.775
THII_2434
Hypothetical protein.
       0.705
THII_2433
Ammonium transporter.
       0.695
THII_2432
Nitrogen regulatory protein PII; Belongs to the P(II) protein family.
     
 0.653
THII_2970
Hypothetical protein.
 
 
 0.470
THII_1322
Lysozyme g.
  
     0.441
THII_1452
Bacteriocin biosynthesis cyclodehydratase domain-containing protein.
  
     0.427
THII_2436
Hypothetical protein.
       0.427
THII_0964
TPR repeat containing protein.
 
 
   0.421
THII_1689
Uncharacterized protein containing a von Willebrand factor type A (vWA) domain.
  
    0.416
Your Current Organism:
Thioploca ingrica
NCBI taxonomy Id: 40754
Other names: T. ingrica
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