Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
THII_2451SCP-like extracellular protein. (733 aa)    
Predicted Functional Partners:
THII_2452
Hypothetical protein.
       0.574
THII_2449
Hypothetical protein.
       0.555
THII_2450
(4Fe-4S) cluster-containing protein.
       0.555
THII_1822
WD repeat-containing protein.
  
     0.544
THII_2453
Hypothetical protein.
       0.476
THII_2504
Hypothetical protein.
  
     0.444
THII_2454
Hypothetical protein.
       0.429
THII_2576
CHU large protein.
  
   
0.421
THII_2364
Hypothetical protein.
  
     0.415
Your Current Organism:
Thioploca ingrica
NCBI taxonomy Id: 40754
Other names: T. ingrica
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