Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
THII_2457PilE/Pilin. (147 aa)    
Predicted Functional Partners:
THII_3933
Bacterial type II and III secretion system protein.
 
   
 0.657
THII_3930
Type IV pilus assembly protein PilO.
  
   
 0.611
THII_3271
Prepilin-type N-terminal cleavage/methylation domain-containing protein.
 
   
 0.610
THII_3929
Type IV pilus assembly protein PilN.
  
   
 0.602
THII_1399
TPR repeat containing protein.
  
     0.591
THII_3928
Type IV pilus assembly protein PilM.
 
   
 0.553
THII_2427
Peptidoglycan-binding LysM.
  
     0.528
THII_3931
Type IV pilus assembly protein PilP.
  
   
 0.522
THII_2180
Tfp pilus assembly protein PilZ.
  
    0.477
THII_3932
Type IV pilus assembly protein PilP.
  
   
 0.467
Your Current Organism:
Thioploca ingrica
NCBI taxonomy Id: 40754
Other names: T. ingrica
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