Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
THII_2460Hypothetical protein. (219 aa)    
Predicted Functional Partners:
THII_2461
Hypothetical protein.
 
 
 0.951
THII_1673
Putative nitrite oxidoreductase/nitrate reductase alpha subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
 
 0.921
THII_1674
Respiratory nitrate reductase beta chain.
  
 
 0.890
THII_2459
Hydrogenase (NiFe) small subunit HydA.
 
   
 0.822
THII_1676
Hypothetical protein.
  
  
 0.802
THII_2462
Hydrogenase (NiFe) small subunit HydA.
 
   
 0.726
THII_1434
Hypothetical protein.
  
     0.717
THII_1464
Hypothetical protein.
  
     0.697
THII_2278
Heterodisulfide reductase subunit A.
 
   
 0.676
THII_0618
Electron transport protein DsrK.
 
 
 0.572
Your Current Organism:
Thioploca ingrica
NCBI taxonomy Id: 40754
Other names: T. ingrica
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