Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
THII_2486Hypothetical protein. (101 aa)    
Predicted Functional Partners:
THII_1001
IS1 transposase.
  
    0.775
THII_3951
Hypothetical protein.
  
     0.658
THII_2485
Transposase, IS1 family.
  
    0.596
THII_2487
Hypothetical protein.
       0.490
THII_0079
Hypothetical protein.
  
     0.482
THII_2249
Hypothetical protein.
  
     0.457
THII_2944
Hypothetical protein.
  
     0.454
THII_2796
AMP-dependent synthetase and ligase.
  
     0.405
Your Current Organism:
Thioploca ingrica
NCBI taxonomy Id: 40754
Other names: T. ingrica
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