rnc protein (Thioploca ingrica) - STRING interaction network

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rnc

Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. (205 aa)

Predicted Functional Partners:

era

0.983

THII_2494

0.942

prfB

0.905

THII_2201

0.894

rplS

0.893

rpmF

0.884

rpsK

0.878

rpmA

0.876

rpsB

0.875

rplQ

0.874

Your Current Organism:

Thioploca ingrica

NCBI taxonomy Id: 40754
Other names: T. ingrica

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
THII_2201	prfB	THII_2201	THII_3278	FkbH-like protein; Belongs to the enoyl-CoA hydratase/isomerase family.	Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.	0.712
THII_2201	rnc	THII_2201	THII_2496	FkbH-like protein; Belongs to the enoyl-CoA hydratase/isomerase family.	Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	0.894
THII_2201	rplQ	THII_2201	THII_0287	FkbH-like protein; Belongs to the enoyl-CoA hydratase/isomerase family.	50S ribosomal protein L17.	0.939
THII_2201	rplS	THII_2201	THII_3882	FkbH-like protein; Belongs to the enoyl-CoA hydratase/isomerase family.	50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.932
THII_2201	rpmA	THII_2201	THII_2917	FkbH-like protein; Belongs to the enoyl-CoA hydratase/isomerase family.	50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	0.927
THII_2201	rpmF	THII_2201	THII_3589	FkbH-like protein; Belongs to the enoyl-CoA hydratase/isomerase family.	50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.	0.967
THII_2201	rpsB	THII_2201	THII_1747	FkbH-like protein; Belongs to the enoyl-CoA hydratase/isomerase family.	30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	0.753
THII_2201	rpsK	THII_2201	THII_0290	FkbH-like protein; Belongs to the enoyl-CoA hydratase/isomerase family.	30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.	0.675
THII_2494	era	THII_2494	THII_2497	Signal peptidase I; Belongs to the peptidase S26 family.	GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.	0.614
THII_2494	rnc	THII_2494	THII_2496	Signal peptidase I; Belongs to the peptidase S26 family.	Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	0.942
THII_2494	rpmF	THII_2494	THII_3589	Signal peptidase I; Belongs to the peptidase S26 family.	50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.	0.506
era	THII_2494	THII_2497	THII_2494	GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.	Signal peptidase I; Belongs to the peptidase S26 family.	0.614
era	rnc	THII_2497	THII_2496	GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.	Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	0.983
era	rpsB	THII_2497	THII_1747	GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.	30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	0.830
era	rpsK	THII_2497	THII_0290	GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.	30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.	0.797
prfB	THII_2201	THII_3278	THII_2201	Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.	FkbH-like protein; Belongs to the enoyl-CoA hydratase/isomerase family.	0.712
prfB	rnc	THII_3278	THII_2496	Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.	Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	0.905
prfB	rplQ	THII_3278	THII_0287	Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.	50S ribosomal protein L17.	0.940
prfB	rplS	THII_3278	THII_3882	Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.	50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.935
prfB	rpmA	THII_3278	THII_2917	Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.	50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	0.951

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