Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| THII_2201 | rnc | THII_2201 | THII_2496 | FkbH-like protein; Belongs to the enoyl-CoA hydratase/isomerase family. | Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | 0.983 |
| THII_2201 | rplQ | THII_2201 | THII_0287 | FkbH-like protein; Belongs to the enoyl-CoA hydratase/isomerase family. | 50S ribosomal protein L17. | 0.982 |
| THII_2201 | rplS | THII_2201 | THII_3882 | FkbH-like protein; Belongs to the enoyl-CoA hydratase/isomerase family. | 50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.985 |
| THII_2201 | rplV | THII_2201 | THII_0307 | FkbH-like protein; Belongs to the enoyl-CoA hydratase/isomerase family. | 50S ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. | 0.981 |
| THII_2201 | rpmA | THII_2201 | THII_2917 | FkbH-like protein; Belongs to the enoyl-CoA hydratase/isomerase family. | 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. | 0.982 |
| THII_2201 | rpmF | THII_2201 | THII_3589 | FkbH-like protein; Belongs to the enoyl-CoA hydratase/isomerase family. | 50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family. | 0.986 |
| THII_2201 | rpsB | THII_2201 | THII_1747 | FkbH-like protein; Belongs to the enoyl-CoA hydratase/isomerase family. | 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | 0.792 |
| THII_2201 | rpsF | THII_2201 | THII_3459 | FkbH-like protein; Belongs to the enoyl-CoA hydratase/isomerase family. | 30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.840 |
| THII_2201 | rpsO | THII_2201 | THII_1180 | FkbH-like protein; Belongs to the enoyl-CoA hydratase/isomerase family. | 30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.801 |
| era | rnc | THII_2497 | THII_2496 | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | 0.988 |
| era | rpsB | THII_2497 | THII_1747 | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | 0.904 |
| era | rpsF | THII_2497 | THII_3459 | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | 30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.963 |
| era | rpsO | THII_2497 | THII_1180 | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | 30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.920 |
| rnc | THII_2201 | THII_2496 | THII_2201 | Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | FkbH-like protein; Belongs to the enoyl-CoA hydratase/isomerase family. | 0.983 |
| rnc | era | THII_2496 | THII_2497 | Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | 0.988 |
| rnc | rplQ | THII_2496 | THII_0287 | Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | 50S ribosomal protein L17. | 0.972 |
| rnc | rplS | THII_2496 | THII_3882 | Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | 50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.979 |
| rnc | rplV | THII_2496 | THII_0307 | Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | 50S ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. | 0.971 |
| rnc | rpmA | THII_2496 | THII_2917 | Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. | 0.977 |
| rnc | rpmF | THII_2496 | THII_3589 | Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | 50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family. | 0.973 |
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