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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
THII_2556Nif-specific regulatory protein. (510 aa)    
Predicted Functional Partners:
THII_2555
Histidine kinase.
 
   0.908
THII_2572
NifA family transcriptional regulator.
  
  
 
0.902
THII_1254
DNA-directed RNA polymerase specialized sigma subunit, sigma54; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
   
 0.807
THII_2571
PAS/PAC sensor signal transduction histidine kinase.
 
 
 0.767
THII_0443
Response regulator receiver protein.
   
 
 0.679
THII_3085
Nitrogen fixation protein NifZ.
 
   
 0.612
THII_1809
Nitrogen fixation protein NifT.
 
   
 0.566
THII_2554
Formylmethanofuran dehydrogenase subunit A.
       0.550
THII_0636
Signal transduction histidine kinase.
   
 
 0.526
THII_0774
Sensory box histidine kinase/response regulator.
   
 
 0.502
Your Current Organism:
Thioploca ingrica
NCBI taxonomy Id: 40754
Other names: T. ingrica
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