STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
THII_2572NifA family transcriptional regulator. (507 aa)    
Predicted Functional Partners:
THII_2556
Nif-specific regulatory protein.
  
  
 
0.902
THII_2571
PAS/PAC sensor signal transduction histidine kinase.
 
 
 0.887
THII_1254
DNA-directed RNA polymerase specialized sigma subunit, sigma54; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
   
 0.807
THII_2555
Histidine kinase.
 
 
   0.680
THII_0443
Response regulator receiver protein.
   
 
 0.679
THII_3085
Nitrogen fixation protein NifZ.
 
   
 0.597
THII_1809
Nitrogen fixation protein NifT.
 
   
 0.544
THII_0636
Signal transduction histidine kinase.
   
 
 0.526
THII_0774
Sensory box histidine kinase/response regulator.
   
 
 0.502
nifW
Nitrogen fixation protein NifW; May protect the nitrogenase Fe-Mo protein from oxidative damage; Belongs to the NifW family.
 
   
 0.475
Your Current Organism:
Thioploca ingrica
NCBI taxonomy Id: 40754
Other names: T. ingrica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.