THII_2650 protein (Thioploca ingrica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

THII_2650

5'-nucleotidase/2',3'-cyclic phosphodiesterase-like hydrolase; Belongs to the 5'-nucleotidase family. (770 aa)

Predicted Functional Partners:

THII_0535

0.655

THII_3405

0.608

THII_0276

0.599

guaB

0.557

THII_2651

0.538

THII_0201

0.523

THII_0879

0.486

THII_0062

0.459

THII_0905

0.458

THII_1879

0.424

Your Current Organism:

Thioploca ingrica

NCBI taxonomy Id: 40754
Other names: T. ingrica

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
THII_0062	THII_0535	THII_0062	THII_0535	Putative esterase of the alpha-beta hydrolase superfamily.	Sigma-70 region 4 domain-containing protein.	0.418
THII_0062	THII_2650	THII_0062	THII_2650	Putative esterase of the alpha-beta hydrolase superfamily.	5'-nucleotidase/2',3'-cyclic phosphodiesterase-like hydrolase; Belongs to the 5'-nucleotidase family.	0.459
THII_0201	THII_2650	THII_0201	THII_2650	5''-deoxy-5''-methylthioadenosine phosphorylase; Catalyzes the reversible phosphorylation of S-methyl-5'- thioinosine (MTI) to hypoxanthine and 5-methylthioribose-1-phosphate. Involved in the breakdown of S-methyl-5'-thioadenosine (MTA), a major by-product of polyamine biosynthesis. Catabolism of (MTA) occurs via deamination to MTI and phosphorolysis to hypoxanthine.	5'-nucleotidase/2',3'-cyclic phosphodiesterase-like hydrolase; Belongs to the 5'-nucleotidase family.	0.523
THII_0276	THII_0535	THII_0276	THII_0535	Clostripain.	Sigma-70 region 4 domain-containing protein.	0.772
THII_0276	THII_0879	THII_0276	THII_0879	Clostripain.	ABC transporter ATP-binding protein.	0.748
THII_0276	THII_0905	THII_0276	THII_0905	Clostripain.	Subtilisin-like serine protease.	0.755
THII_0276	THII_1879	THII_0276	THII_1879	Clostripain.	Hypothetical protein; RNA chaperone with significant RNA binding, RNA strand exchange and RNA duplexing activities; Belongs to the ProQ family.	0.753
THII_0276	THII_2650	THII_0276	THII_2650	Clostripain.	5'-nucleotidase/2',3'-cyclic phosphodiesterase-like hydrolase; Belongs to the 5'-nucleotidase family.	0.599
THII_0276	THII_3405	THII_0276	THII_3405	Clostripain.	Hypothetical protein.	0.702
THII_0535	THII_0062	THII_0535	THII_0062	Sigma-70 region 4 domain-containing protein.	Putative esterase of the alpha-beta hydrolase superfamily.	0.418
THII_0535	THII_0276	THII_0535	THII_0276	Sigma-70 region 4 domain-containing protein.	Clostripain.	0.772
THII_0535	THII_0879	THII_0535	THII_0879	Sigma-70 region 4 domain-containing protein.	ABC transporter ATP-binding protein.	0.768
THII_0535	THII_0905	THII_0535	THII_0905	Sigma-70 region 4 domain-containing protein.	Subtilisin-like serine protease.	0.768
THII_0535	THII_1879	THII_0535	THII_1879	Sigma-70 region 4 domain-containing protein.	Hypothetical protein; RNA chaperone with significant RNA binding, RNA strand exchange and RNA duplexing activities; Belongs to the ProQ family.	0.777
THII_0535	THII_2650	THII_0535	THII_2650	Sigma-70 region 4 domain-containing protein.	5'-nucleotidase/2',3'-cyclic phosphodiesterase-like hydrolase; Belongs to the 5'-nucleotidase family.	0.655
THII_0535	THII_3405	THII_0535	THII_3405	Sigma-70 region 4 domain-containing protein.	Hypothetical protein.	0.748
THII_0879	THII_0276	THII_0879	THII_0276	ABC transporter ATP-binding protein.	Clostripain.	0.748
THII_0879	THII_0535	THII_0879	THII_0535	ABC transporter ATP-binding protein.	Sigma-70 region 4 domain-containing protein.	0.768
THII_0879	THII_0905	THII_0879	THII_0905	ABC transporter ATP-binding protein.	Subtilisin-like serine protease.	0.662
THII_0879	THII_1879	THII_0879	THII_1879	ABC transporter ATP-binding protein.	Hypothetical protein; RNA chaperone with significant RNA binding, RNA strand exchange and RNA duplexing activities; Belongs to the ProQ family.	0.710