Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
THII_2735Multidrug ABC transporter ATP-binding protein. (308 aa)    
Predicted Functional Partners:
THII_2736
Mannose-1-phosphate guanyltransferase.
  
 0.996
THII_2734
Multidrug resistance efflux pump.
  
 0.962
THII_0487
ABC transporter.
 
    
0.873
THII_3114
Hypothetical protein.
 
    
 0.828
THII_2733
Hypothetical protein.
       0.509
THII_2893
ABC-2 type transporter.
  
 
 0.470
THII_2738
ABC transporter.
 
    
0.458
THII_1968
ABC transporter permease.
  
 
 0.438
THII_1662
ABC transporter permease.
  
 
 0.433
THII_3566
Metal-dependent hydrolase.
  
  
 0.427
Your Current Organism:
Thioploca ingrica
NCBI taxonomy Id: 40754
Other names: T. ingrica
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