Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
THII_2738ABC transporter. (268 aa)    
Predicted Functional Partners:
THII_3114
Hypothetical protein.
 
 0.961
THII_2737
Hypothetical protein.
       0.773
THII_1321
ABC transporter ATP-binding protein.
  
     0.732
THII_2891
ABC transporter.
  
     0.705
THII_0486
ABC transporter permease.
 
 
 0.700
THII_0906
ATPase AAA.
  
     0.699
THII_1789
Ferrichrome transport ATP-binding protein FhuC.
  
   0.693
THII_0488
ABC transporter permease.
 
 
 0.647
lolA
Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
   
 
 0.610
THII_0139
Hypothetical protein.
 
 
 0.580
Your Current Organism:
Thioploca ingrica
NCBI taxonomy Id: 40754
Other names: T. ingrica
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