Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
THII_2758NnrS family protein. (390 aa)    
Predicted Functional Partners:
THII_0335
Nitric-oxide reductase subunit B; Belongs to the heme-copper respiratory oxidase family.
 
  
 0.719
THII_2676
Collagenase-like protease.
 
    0.674
THII_0334
Nitric-oxide reductase.
 
    0.598
THII_2675
Lipid carrier protein.
 
    0.596
THII_2677
Collagenase-like protease.
 
    0.519
THII_1767
Hypothetical protein.
 
     0.497
THII_0339
Von Willebrand factor type A.
 
  
 0.471
THII_3325
Invasion gene expression up-regulator SirB.
 
     0.464
THII_2759
Hypothetical protein.
       0.450
THII_2753
Histidine kinase.
 
     0.444
Your Current Organism:
Thioploca ingrica
NCBI taxonomy Id: 40754
Other names: T. ingrica
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