Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
THII_2778WD40 repeat-containing protein, subgroup. (1082 aa)    
Predicted Functional Partners:
THII_1822
WD repeat-containing protein.
  
     0.638
THII_2779
Hypothetical protein.
 
     0.617
THII_1630
GTP-binding protein.
 
 
  0.573
THII_2208
Polyketide synthase.
 
 
 0.545
THII_0964
TPR repeat containing protein.
 
 
 0.516
THII_2584
FKBP-type peptidylprolyl cis-trans isomerase.
 
   0.496
THII_2996
WD repeat-containing protein.
 
 
 
0.479
THII_1629
OmpA/MotB protein.
 
   0.461
THII_3283
PDK repeat-containing protein.
 
     0.455
rpmD
50S ribosomal protein L30.
   
  0.454
Your Current Organism:
Thioploca ingrica
NCBI taxonomy Id: 40754
Other names: T. ingrica
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