Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
THII_2823GMC oxidoreductase. (528 aa)    
Predicted Functional Partners:
THII_3111
Cytochrome c.
 
 
 0.825
THII_2822
Hypothetical protein.
       0.718
THII_1693
Ankyrin.
    
 0.651
THII_3678
Ankyrin.
    
 0.651
THII_2201
FkbH-like protein; Belongs to the enoyl-CoA hydratase/isomerase family.
     
 0.599
THII_2208
Polyketide synthase.
     
 0.521
THII_2824
Alpha-1,2-glucosyltransferase.
       0.515
THII_2821
Hypothetical protein.
       0.489
THII_2818
Hypothetical protein.
 
     0.460
THII_0318
Hypothetical protein.
    
  0.414
Your Current Organism:
Thioploca ingrica
NCBI taxonomy Id: 40754
Other names: T. ingrica
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