Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
THII_2842Hypothetical protein. (170 aa)    
Predicted Functional Partners:
THII_2843
General secretion pathway protein G.
       0.697
THII_0257
Glutamine synthetase, type I.
   
   0.617
hemA
glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA).
   
   0.440
THII_0172
Hypothetical protein.
  
     0.429
THII_3142
O-antigen polymerase.
  
     0.428
THII_0535
Sigma-70 region 4 domain-containing protein.
 
     0.409
THII_3420
ABC transporter ATP-binding protein, putative.
 
    0.407
THII_1847
Signal transduction histidine kinase.
  
 
   0.401
Your Current Organism:
Thioploca ingrica
NCBI taxonomy Id: 40754
Other names: T. ingrica
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