Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
THII_2884Nitrous oxide reductase. (762 aa)    
Predicted Functional Partners:
THII_0335
Nitric-oxide reductase subunit B; Belongs to the heme-copper respiratory oxidase family.
  
 
 0.993
THII_0334
Nitric-oxide reductase.
 
 
 0.984
THII_2888
Copper ABC transporter substrate-binding protein.
 
  
 0.971
THII_2893
ABC-2 type transporter.
 
  
 0.955
nifH
Nitrogenase iron protein; The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex, which has 2 components: the iron protein and the molybdenum-iron protein; Belongs to the NifH/BchL/ChlL family.
     
 0.910
THII_1807
Nitrogenase molybdenum-iron protein alpha chain.
     
 0.905
THII_1808
Nitrogenase molybdenum-iron protein beta chain; This molybdenum-iron protein is part of the nitrogenase complex that catalyzes the key enzymatic reactions in nitrogen fixation; Belongs to the NifD/NifK/NifE/NifN family.
     
 0.901
THII_2892
Hypothetical protein.
 
  
 0.891
THII_2877
Cytochrome d1 heme subunit.
 
  
 0.880
THII_2876
C-type cytochrome c55x.
 
  
 0.872
Your Current Organism:
Thioploca ingrica
NCBI taxonomy Id: 40754
Other names: T. ingrica
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