Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
THII_2885Cytochrome c553. (230 aa)    
Predicted Functional Partners:
THII_0851
Cytochrome c.
 
 
 
 0.887
THII_0853
Ubiquinol-cytochrome c reductase; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
 
 
 0.842
THII_2884
Nitrous oxide reductase.
 
   
 0.819
THII_2893
ABC-2 type transporter.
 
     0.794
THII_2891
ABC transporter.
 
     0.757
THII_1692
Flavocytochrome c subunit fccA.
 
     0.746
THII_2888
Copper ABC transporter substrate-binding protein.
 
     0.715
THII_2892
Hypothetical protein.
 
     0.707
THII_1247
Cytochrome c, class I.
 
 
 
 0.700
THII_1616
Cytochrome c oxidase cbb3-type, subunit II.
  
 
 0.676
Your Current Organism:
Thioploca ingrica
NCBI taxonomy Id: 40754
Other names: T. ingrica
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