Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
THII_2963PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein. (875 aa)    
Predicted Functional Partners:
THII_2168
Signal transduction histidine kinase.
  
 
 0.974
THII_2294
PAS domain S-box.
  
 
 0.945
THII_0636
Signal transduction histidine kinase.
  
 
 0.941
THII_0331
PAS domain S-box.
  
 
 0.933
THII_2440
Multi-sensor hybrid histidine kinase.
  
 
 0.933
THII_1913
PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein.
 
 
0.922
THII_3834
Sensory transduction histidine kinase.
  
 
 0.913
THII_2180
Tfp pilus assembly protein PilZ.
    
 
 0.906
THII_1021
PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein.
 
 
0.887
THII_3768
Diguanylate cyclase/phosphodiesterase.
 
 
0.878
Your Current Organism:
Thioploca ingrica
NCBI taxonomy Id: 40754
Other names: T. ingrica
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