STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
THII_2973Hydrogenase accessory protein HypB. (288 aa)    
Predicted Functional Partners:
THII_0915
Ni,Fe-hydrogenase III large subunit.
   
 
 0.987
THII_3675
Hydrogenase assembly protein HupF; Belongs to the HypD family.
 
  
 0.952
THII_3543
Hydrogenase assembly chaperone HypC/HupF.
 
  
 0.939
hypA
Hydrogenase nickel incorporation protein HypA; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase.
 
 
 0.935
THII_2694
Hydrogenase expression/formation protein HypE.
 
  
 0.871
THII_3213
Nickel-iron hydrogenase, carbamoyltransferase maturation factor; Involved in the maturation of [NiFe] hydrogenases. Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of [NiFe]-hydrogenases. HypF functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide.
 
   
 0.854
THII_3315
Nickel-dependent hydrogenase large subunit; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family.
 
  
 0.762
THII_2462
Hydrogenase (NiFe) small subunit HydA.
 
  
 0.737
THII_2459
Hydrogenase (NiFe) small subunit HydA.
 
  
 0.722
THII_3592
Ni,Fe-hydrogenase maturation factor.
 
  
 0.660
Your Current Organism:
Thioploca ingrica
NCBI taxonomy Id: 40754
Other names: T. ingrica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.