Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
THII_3048Hypothetical protein. (236 aa)    
Predicted Functional Partners:
THII_2996
WD repeat-containing protein.
   
 0.839
THII_3049
DNA polymerase III subunit delta.
       0.678
THII_3050
Hypothetical protein.
       0.675
THII_3051
Putative spermidine synthase with an N-terminal membrane domain.
       0.648
THII_3052
UbiA prenyltransferase family protein; Belongs to the UbiA prenyltransferase family.
       0.634
THII_3486
Peptidase M1 family protein.
   
 
 0.493
htpG
Heat shock protein Hsp90; Molecular chaperone. Has ATPase activity.
   
 0.475
alaS
alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.426
THII_2823
GMC oxidoreductase.
    
  0.414
THII_3047
Hypothetical protein.
       0.406
Your Current Organism:
Thioploca ingrica
NCBI taxonomy Id: 40754
Other names: T. ingrica
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