STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
THII_3052UbiA prenyltransferase family protein; Belongs to the UbiA prenyltransferase family. (475 aa)    
Predicted Functional Partners:
THII_3017
Short-chain dehydrogenase/reductase SDR.
 
    0.823
THII_3018
FAD linked oxidase domain-containing protein.
 
  
 0.819
THII_3051
Putative spermidine synthase with an N-terminal membrane domain.
       0.757
THII_3050
Hypothetical protein.
  
  
 0.745
THII_3049
DNA polymerase III subunit delta.
       0.726
THII_3048
Hypothetical protein.
       0.634
THII_2819
Phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Belongs to the UbiA prenyltransferase family.
  
     0.481
THII_2208
Polyketide synthase.
  
 
 0.460
lgt
Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family.
  
    0.418
Your Current Organism:
Thioploca ingrica
NCBI taxonomy Id: 40754
Other names: T. ingrica
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