STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
THII_3052UbiA prenyltransferase family protein; Belongs to the UbiA prenyltransferase family. (475 aa)    
Predicted Functional Partners:
THII_3018
FAD linked oxidase domain-containing protein.
 
  
 0.825
THII_3017
Short-chain dehydrogenase/reductase SDR.
 
  
 0.811
THII_3051
Putative spermidine synthase with an N-terminal membrane domain.
       0.761
THII_3050
Hypothetical protein.
  
  
 0.754
THII_3049
DNA polymerase III subunit delta.
       0.726
THII_3048
Hypothetical protein.
       0.634
THII_2208
Polyketide synthase.
  
 
 0.544
THII_0012
Polyketide synthase family protein.
     
 0.489
THII_2819
Phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Belongs to the UbiA prenyltransferase family.
  
     0.481
atpD-2
ATP synthase F1 subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.
   
  0.457
Your Current Organism:
Thioploca ingrica
NCBI taxonomy Id: 40754
Other names: T. ingrica
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