Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
THII_3058Glutamate synthase. (481 aa)    
Predicted Functional Partners:
THII_3728
Glutamate synthase.
 0.999
THII_0118
Glutamate synthase, domain 2.
 
 0.995
THII_1524
NADP oxidoreductase.
 
 
 0.982
THII_0527
NADH-quinone oxidoreductase subunit F; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family.
 
 
 0.956
THII_0257
Glutamine synthetase, type I.
  
 
 0.949
THII_3762
Aspartate aminotransferase.
   
 
 0.923
glmS
Glucosamine--fructose-6-phosphate aminotransferase; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.
    
 0.910
carB
Carbamoyl-phosphate synthase, large subunit; Belongs to the CarB family.
   
 
 0.908
carA
Carbamoyl-phosphate synthase, small subunit; Belongs to the CarA family.
    
  0.901
THII_1523
Hydrogen dehydrogenase.
      0.901
Your Current Organism:
Thioploca ingrica
NCBI taxonomy Id: 40754
Other names: T. ingrica
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