Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
THII_3067Histidine kinase. (574 aa)    
Predicted Functional Partners:
THII_2379
Hypothetical protein.
  
     0.774
THII_0899
ATPase AAA.
  
     0.773
THII_1194
Hypothetical protein.
  
     0.773
THII_2767
Prepilin-type N-terminal cleavage/methylation domain-containing protein.
 
     0.771
THII_2765
Prepilin-type N-terminal cleavage/methylation domain-containing protein.
 
     0.768
THII_3857
Diguanylate cyclase (GGDEF) domain-containing protein.
  
 
   0.766
THII_2766
Hypothetical protein.
 
     0.764
mnmE
tRNA modification GTPase; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.
       0.762
THII_3847
ATPase.
  
     0.759
THII_2075
General secretion pathway protein H.
  
     0.743
Your Current Organism:
Thioploca ingrica
NCBI taxonomy Id: 40754
Other names: T. ingrica
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