STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nifWNitrogen fixation protein NifW; May protect the nitrogenase Fe-Mo protein from oxidative damage; Belongs to the NifW family. (115 aa)    
Predicted Functional Partners:
THII_3085
Nitrogen fixation protein NifZ.
 
  
 0.964
THII_3087
Hypothetical protein.
 
     0.950
THII_1808
Nitrogenase molybdenum-iron protein beta chain; This molybdenum-iron protein is part of the nitrogenase complex that catalyzes the key enzymatic reactions in nitrogen fixation; Belongs to the NifD/NifK/NifE/NifN family.
 
  
 0.884
THII_3130
Nitrogenase cofactor biosynthesis protein NifB.
 
  
 0.884
THII_3088
Homocitrate synthase NifV; Belongs to the alpha-IPM synthase/homocitrate synthase family.
 
  
 0.881
THII_1809
Nitrogen fixation protein NifT.
 
  
 0.867
THII_3125
NifQ family protein.
 
  
 0.858
THII_1811
NifY protein.
 
  
 0.857
THII_1817
Nitrogen fixation protein.
 
  
 0.842
THII_1807
Nitrogenase molybdenum-iron protein alpha chain.
 
  
 0.832
Your Current Organism:
Thioploca ingrica
NCBI taxonomy Id: 40754
Other names: T. ingrica
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